rs222558382 SNP Detail

Summary

• ID
  rs222558382
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:29581621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAAATGT AAATAAAAGT
  TATTTTGCAG TATTAAAGAT CTTTCAAAGT TTTCTATTTG TTACCATTAT ACATAGATTA
  AAAAATAATG GATTTAAAAT TTGAATATTC ATTTGCATTG TTTGTTCTAT GTAGAAATGC
  AGCACATGTA CCACGTTCAA AAAGGCAGTT ATATCTGAGG AAATTATATT TGCTAATAAA
  R
  TAATATTTTA AATGTCGTAT GTCTAAGCCA GACATCCCAT GTCAACCTGT AAGACAGTCT
  AATTCTATGG AGACCTGTTG TTTCAAAAAT GCATATTATC TCTTCTAACA CAGTTTACTT
  GCTATGCATT TCAGTGGCTA GATTTTAAAT TACAAACAAT AACGTAAGGT TTTAGTCACT
  CTTGTGCTTT AAAATAGATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385439805	MGP_WTSI_12_30216487	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222558382					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385439805	MGP_WTSI_12_30216487	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:29581621 () rs orientation: forward

Symbol	Name	Function Class
Gm20208	predicted gene, 20208	512 bp upstream
Myt1l	myelin transcription factor 1-like	Intron
Rr464423	regulatory region 464423	518 bp distal
Rr464424	regulatory region 464424	413 bp distal
Rr464425	regulatory region 464425	1278 bp proximal
Tssr113063	transcription start site region 113063	1658 bp upstream
Tssr113064	transcription start site region 113064	1670 bp upstream
Tssr113065	transcription start site region 113065	1729 bp upstream
Tssr113066	transcription start site region 113066	1806 bp upstream
Tssr113067	transcription start site region 113067	1829 bp upstream
Tssr113068	transcription start site region 113068	1855 bp upstream
Tssr116026	transcription start site region 116026	479 bp upstream