rs222558615 SNP Detail

Summary

• ID
  rs222558615
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10612379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATTATGA ATTCTAGACT
  AGCCTGGGCT ACAGAGGGAG AACTTGTCAC TGCTCCTTAA AATTAATTTA AGCCGGGCGT
  GGTGGCACTC GCCTTTAGTC CCAGCACTTG AGAGGCAGAG GCAGGTGAAT TTCTGAGTTC
  AAGGCCAGCC TGGCCTACAG AGTGAGTTCC AGGACAGCCA GGGCTACACA GAGAAACCTT
  R
  TCTTGAAGAA ACAAGGAAAA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGATC TGGGTTGCAG ACACTGGTCA ATGAGAAGAA ATATTGAACT
  GATGCAAGAT TAGAAACCAC AAATAAAAGA AAAACAAGTG TCCTGGTTTT GTTTTGTTTT
  GTTTTGTTTT GTTTTGTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325524308	CHEV_18_10612377	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222558615					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10612379 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	1731 bp distal
Rr533780	regulatory region 533780	1537 bp distal
Rr533782	regulatory region 533782	1937 bp distal