rs222559906 SNP Detail

Summary

• ID
  rs222559906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58423786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATGATAA CCACACCCCC
  TCCCAGCATG TGCATGAACA ACACACACAA GGATCGGAAA CTCCTCAGCT TAGTAGCGTA
  TTGCTATAAG AGAAGGGGGC AGACTCAGTC TAGAAATACA TCATCATTAG AGTCTTGCTA
  CCCCAAAGTT GACCACATGT GTGTCACCAG CAAGTTTGTC AGAAACGTGT GGATCTCGGG
  Y
  CTAACACACA CCTGCCCATT AGAATCTGCA ACCTCAAAGA AATTCCAAGA GGTGACCCCA
  TCAGATTTTG GGAAGCTCAG CTCTAGATGA GGAAAGTCAA CAGAGGAGGG GAGGGTGGGC
  AGGGAGGAAG AGAGGGACAC TTGGGTAAGG CACCACAGCA GGGGACTTCA GTCTCGTCAA
  AGCTGGGCCA GGGAGTGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388759202	MGP_WTSI_13_58377333	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222559906					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388759202	MGP_WTSI_13_58377333	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58423786 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5724	CpG island 5724	713 bp distal
Gkap1	G kinase anchoring protein 1	1095 bp upstream
Rr481008	regulatory region 481008	1795 bp distal
Rr481009	regulatory region 481009	1294 bp distal
Tssr120072	transcription start site region 120072	1692 bp downstream
Tssr122823	transcription start site region 122823	1857 bp upstream
Tssr122824	transcription start site region 122824	1765 bp upstream
Tssr122825	transcription start site region 122825	1634 bp upstream
Tssr122826	transcription start site region 122826	1608 bp upstream
Tssr122827	transcription start site region 122827	1595 bp upstream
Tssr122828	transcription start site region 122828	1477 bp upstream
Tssr122829	transcription start site region 122829	1454 bp upstream
Tssr122830	transcription start site region 122830	1121 bp upstream
Tssr122831	transcription start site region 122831	321 bp upstream
Tssr122832	transcription start site region 122832	269 bp upstream