rs222560325 SNP Detail

Summary

• ID
  rs222560325
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112424354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAGTAT TAATATAGCC
  ATACGCAGAG GAAAAAAAGA AAACATTTCC AGCACTATGT CTAAAATCAA ATATCTGTTA
  GTTAAAAAGA AAAGGGAGTT GCCATGATCA GTGACATACA AAAAGCCAGG TGCTATCACT
  CACCACCCAG GCTCTTGGAG GACAGATAGG AGAATCCTGG CTTCCTGCCA GCCAACCTAG
  R
  CACCCGGACA AGGCCTGGGT GTCAGGGAGA GACTCTCTCT GGAAAAAACA AGGAAGGTGA
  TCCTGAAAAG AGATTCCTGA TGGACCTGTG ACATATACAC GCTCAGGTGT GCACACATAT
  AGATATAAAG CCAAAACCAC AAAGGAAATG TCTTCATTTT GTAAAAACAC AAACGAACTA
  GACAGATGTC TTCCCCTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389995936	MGP_WTSI_13_113078028	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	A	G	G	G	G	A	G	G	G	A	G	A	G	G	G	G	G	G	A	G	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222560325					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	A	G	G	G	G	A	G	G	G	A	G	A	G	G	G	G	G	G	A	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389995936	MGP_WTSI_13_113078028	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112424354 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	631 bp upstream
Rr486330	regulatory region 486330	141 bp proximal
Rr486331	regulatory region 486331	1011 bp proximal
Tssr121099	transcription start site region 121099	676 bp upstream
Tssr121100	transcription start site region 121100	696 bp upstream
Tssr121101	transcription start site region 121101	760 bp upstream
Tssr121102	transcription start site region 121102	970 bp upstream
Tssr124046	transcription start site region 124046	1328 bp downstream