rs222571779 SNP Detail

Summary

• ID
  rs222571779
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123260797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGGTGGC ACAGTCCTCC
  ACCAAAACTA TATTGTTGGG CTCCCCAGCA TCCCAGAAGC TGTGAAGGAA AAACACAGGA
  GATCTTAAAT ATCAGAAATA GCAGCCTTAA CATAGCAAAC AACTTACATA TTTGTTATTT
  AACTATCATT TTGGGAGATG GAAATTATAA TCTCCATTTT ATCAATGAGA AAACCCATTT
  S
  CCTACATCAT CAGATGGTGG GACATTACTG GATTTTTATG CTGTTATGCA GATCTATAGA
  TTTAAACTCA TAAAGGGGCA TCATGGTGAG TACTGCTGGC CTGGCATATG TGCTGCCTCT
  GTTCTTCTAC CTTACACCAA TATTACTTTT ACTGCTCTGC CAGAGTTTGT TTTCCTGAGG
  CATCCTTCAT GTACAGTAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369922420	MGP_WTSI_6_123233856	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222571779					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369922420	MGP_WTSI_6_123233856	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123260797 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	1058 bp downstream
Tssr58809	transcription start site region 58809	421 bp downstream
Tssr58810	transcription start site region 58810	396 bp downstream
Tssr58811	transcription start site region 58811	307 bp downstream
Tssr63020	transcription start site region 63020	1334 bp upstream
Tssr63021	transcription start site region 63021	1256 bp upstream
Tssr63022	transcription start site region 63022	1217 bp upstream
Tssr63023	transcription start site region 63023	1162 bp upstream
Tssr63024	transcription start site region 63024	1064 bp upstream
Tssr63025	transcription start site region 63025	1032 bp upstream
Tssr63026	transcription start site region 63026	1011 bp upstream
Tssr63027	transcription start site region 63027	973 bp upstream
Tssr63028	transcription start site region 63028	948 bp upstream
Tssr63029	transcription start site region 63029	920 bp upstream
Tssr63030	transcription start site region 63030	864 bp upstream
Tssr63031	transcription start site region 63031	834 bp upstream
Tssr63032	transcription start site region 63032	803 bp upstream
Tssr63033	transcription start site region 63033	789 bp upstream
Tssr63034	transcription start site region 63034	763 bp upstream
Tssr63035	transcription start site region 63035	748 bp upstream
Tssr63036	transcription start site region 63036	681 bp upstream
Tssr63037	transcription start site region 63037	648 bp upstream
Tssr63038	transcription start site region 63038	623 bp upstream
Tssr63039	transcription start site region 63039	555 bp upstream
Tssr63040	transcription start site region 63040	511 bp upstream
Tssr63041	transcription start site region 63041	464 bp upstream
Tssr63042	transcription start site region 63042	444 bp upstream
Tssr63043	transcription start site region 63043	427 bp upstream
Tssr63044	transcription start site region 63044	392 bp upstream
Tssr63045	transcription start site region 63045	312 bp upstream
Tssr63046	transcription start site region 63046	299 bp upstream
Tssr63047	transcription start site region 63047	278 bp upstream
Tssr63048	transcription start site region 63048	244 bp upstream
Tssr63049	transcription start site region 63049	220 bp upstream
Tssr63050	transcription start site region 63050	175 bp upstream
Tssr63051	transcription start site region 63051	153 bp upstream
Tssr63052	transcription start site region 63052	1349 bp downstream
Tssr63053	transcription start site region 63053	1459 bp downstream
Tssr63054	transcription start site region 63054	1626 bp downstream
Tssr63055	transcription start site region 63055	1653 bp downstream
Tssr63056	transcription start site region 63056	1694 bp downstream
Tssr63057	transcription start site region 63057	1727 bp downstream