CTACT GAGCTACTCC AGCACAGCTA C TCTACCACTG AGCTACTCCA AGACA C = C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | B10.RIII-H2 |
BTBR T<+> Itpr3 |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CZECHII/EiJ |
I/LnJ |
JF1/MsJ |
MA/MyJ |
MOLF/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss639348590 | FVB_NJ_1_173911623 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | B10.RIII-H2 |
BTBR T<+> Itpr3 |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CZECHII/EiJ |
I/LnJ |
JF1/MsJ |
MA/MyJ |
MOLF/EiJ |
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rs222573654 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss639348590 | FVB_NJ_1_173911623 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr1:171809059 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr396575 | regulatory region 396575 | 779 bp upstream | ||||||
Rr423419 | regulatory region 423419 | 588 bp distal | ||||||
Rr423420 | regulatory region 423420 | 610 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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