rs222579164 SNP Detail

Summary

• ID
  rs222579164
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89339825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGAAGCCG GGGGGCGGGG
  CCGGGGGCGG GGGCGGGGGC GGGGCGGGAC CCGCGATGGC CTGCAGGGGG CGCTCGGCCC
  CGCGGCGAGA GCGCGCGCGG CGGGCCCCAC CGCTTGCCTT CAAAGGGCGA TGGCCACCTC
  AGCCTTAAAA CTCTGGACTG GGGTGGGGGT GGGTGAGGTG GTCCGGGTGG TCCCAGGAGT
  Y
  GATGCACTCT TTAAGGAGCA CAGGCTGGAA GTACAGCTTT CGTGCACGGA AGGGTAAACT
  GAGTCCGGAG GAAGCACTTG CCCTGGTCCT ATTGCTCATC TCTGCCTGCG CAACGATCGC
  TTAGGTGGGA CCGGCACTGC ACCCCGCAGG CCCCAGGAGG TGGCGCGTGC CGGGATGCCT
  AAGCTCAGAG GACGACTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369148427	MGP_WTSI_6_89312837	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222579164					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369148427	MGP_WTSI_6_89312837	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89339825 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17713	CpG island 17713	within coordinates
Plxna1	plexin A1	230 bp upstream
Rr146639	regulatory region 146639	within coordinates
Rr152199	regulatory region 152199	1482 bp proximal
Tssr57621	transcription start site region 57621	1773 bp upstream
Tssr62008	transcription start site region 62008	269 bp upstream
Tssr62009	transcription start site region 62009	206 bp upstream
Tssr62010	transcription start site region 62010	736 bp downstream
Tssr62011	transcription start site region 62011	1541 bp downstream
Tssr62012	transcription start site region 62012	1652 bp downstream