rs222579651 SNP Detail

Summary

• ID
  rs222579651
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:98180944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCACACCTG GAAATATCTA
  GTCCCACTCT CCCTGAGCCC AGTTATCACG GGTTTCACCT TGAAAAGGCT AAGTAGTGGA
  GGAGATAAAG CCAGGTAACT TGTAAGCATT GTGCAATGTG TACATTAATA TGTACAATTT
  TATGGTTACG TATGACTCAA AGAACAAACT GAATCACAAT AAGACTTCAT CCGGCGGTGA
  R
  CTCATCAGAT CTTGCCAAAA TCCTACAGGG GCTGAAGTTT GTGTGCAAAT TTCTCCTTAC
  TGATTCTGTT CTCTTCCCCA TTTCTCCCTC CCCTCTCTTC TCCACCACTT CCACCTGTGA
  CTTCCCCTTT TGCTTTGTCA ACAACGTAGC TTTTAGAGCT TTCAACGTCA CTGATGCACA
  CAGTGACTGA GAGGAGGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365959515	MGP_WTSI_5_98462104	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222579651					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365959515	MGP_WTSI_5_98462104	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:98180944 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16083	CpG island 16083	1525 bp distal
Gm42759	predicted gene 42759	1448 bp downstream
Rr615103	regulatory region 615103	1552 bp distal
Rr615104	regulatory region 615104	within coordinates
Tssr47435	transcription start site region 47435	1975 bp downstream
Tssr47436	transcription start site region 47436	1796 bp downstream
Tssr47437	transcription start site region 47437	1775 bp downstream
Tssr47438	transcription start site region 47438	215 bp upstream
Tssr51995	transcription start site region 51995	1831 bp upstream
Tssr51996	transcription start site region 51996	1769 bp upstream
Tssr51997	transcription start site region 51997	1738 bp upstream
Tssr51998	transcription start site region 51998	1697 bp upstream
Tssr51999	transcription start site region 51999	1664 bp upstream
Tssr52000	transcription start site region 52000	1636 bp upstream
Tssr52001	transcription start site region 52001	1622 bp upstream
Tssr52002	transcription start site region 52002	1598 bp upstream
Tssr52003	transcription start site region 52003	1562 bp upstream
Tssr52004	transcription start site region 52004	1985 bp downstream