rs222580118 SNP Detail

Summary

• ID
  rs222580118
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91052840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTGAGCC TCTAAGGCTT
  CCCGATGAAG AAGAGCTGGG GTTTCCAGTG AGAGGCTTGA AATTCAGGTG TAGGCTCTCG
  CTCTTATCCT GACTGAGTTC AGTGAAAAAG CAATAGGTAT TGTTCTTGTT TACAACGTAC
  GCGAAGTCAT GCCTTGACAT TTTTACTCTT AACATCATTT GGAAAGGTTC AAGCTGGTAC
  W
  ATTGTAACGC CAGCTCTACT ATTCTAGTTT CAAAGCGCCC AGAGTGTTTA TTGCTGGAAA
  GTCCAGCAAT AGGTAGCAGG TCCCTTGTGG AGGCTAGAGA TGGTTTCGTT TGGAGAGTAA
  ACCAAGGTCC AGGATGAAGT CAAAAGAAGG GGGCTCTGCA ACCCGCCTTT AAGATACCCA
  CTAACAGCAA CCATTTTCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365847510	MGP_WTSI_5_91334007	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222580118					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365847510	MGP_WTSI_5_91334007	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91052840 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Gm73232	predicted gene, 73232	1777 bp upstream
Rr614420	regulatory region 614420	1788 bp distal
Rr614421	regulatory region 614421	1919 bp distal
Rr614422	regulatory region 614422	1098 bp distal
Tssr47224	transcription start site region 47224	1272 bp downstream
Tssr47225	transcription start site region 47225	1170 bp downstream
Tssr47226	transcription start site region 47226	1101 bp downstream
Tssr47227	transcription start site region 47227	907 bp downstream
Tssr47228	transcription start site region 47228	844 bp downstream
Tssr47229	transcription start site region 47229	823 bp downstream
Tssr47230	transcription start site region 47230	798 bp downstream
Tssr47231	transcription start site region 47231	768 bp downstream
Tssr47232	transcription start site region 47232	621 bp downstream
Tssr47233	transcription start site region 47233	571 bp downstream
Tssr47234	transcription start site region 47234	536 bp downstream
Tssr47235	transcription start site region 47235	207 bp upstream
Tssr47236	transcription start site region 47236	227 bp upstream
Tssr47237	transcription start site region 47237	276 bp upstream
Tssr47238	transcription start site region 47238	282 bp upstream
Tssr47239	transcription start site region 47239	342 bp upstream
Tssr47240	transcription start site region 47240	354 bp upstream
Tssr47241	transcription start site region 47241	369 bp upstream
Tssr47242	transcription start site region 47242	406 bp upstream
Tssr47243	transcription start site region 47243	429 bp upstream
Tssr47244	transcription start site region 47244	463 bp upstream
Tssr47245	transcription start site region 47245	483 bp upstream
Tssr47246	transcription start site region 47246	534 bp upstream
Tssr47247	transcription start site region 47247	578 bp upstream
Tssr47248	transcription start site region 47248	641 bp upstream
Tssr47249	transcription start site region 47249	711 bp upstream
Tssr47250	transcription start site region 47250	849 bp upstream
Tssr47251	transcription start site region 47251	913 bp upstream
Tssr47252	transcription start site region 47252	965 bp upstream
Tssr51810	transcription start site region 51810	1838 bp upstream
Tssr51811	transcription start site region 51811	1784 bp upstream
Tssr51812	transcription start site region 51812	754 bp upstream
Tssr51813	transcription start site region 51813	737 bp upstream
Tssr51814	transcription start site region 51814	226 bp downstream
Tssr51815	transcription start site region 51815	260 bp downstream
Tssr51816	transcription start site region 51816	294 bp downstream