rs222581163 SNP Detail

Summary

• ID
  rs222581163
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11686997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATCGAGA GGCCCTGGCG
  TCTGTAACTG TAAAGCATGA GTCACGTGAG CAGGCTGGGC ACATGGTGAA AGAAATTTTA
  GAAAAATTGA CTACTAAATT CTCTTTCCAA TGGTACAATG CTATGGTTGT AAAAAATTTG
  AAATTTTTCT TTTTTCTTTT TCTTTTTGTT CTAATTTTGG TTTTTCGAGA CAGGGTTTCA
  Y
  TGTGTAGCCC AGCCTGGTCT ACTCACTCTG TAGACCAGGC TGGCCTTGAA CTCAGAAATC
  CTCCTGCTTC TGCTGGGATT AAAGGCGAGC ACCACCACCT CCTGGCTATA AAATTTGAAA
  ATCATACTGA GCCATTAAGG AGTAGACACT ATTCATGGAA GTTTTACTTT TTTTTTTTTT
  TTTTTTTGGT TTTTTTCGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373700980	MGP_WTSI_8_11636997	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222581163					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373700980	MGP_WTSI_8_11636997	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11686997 () rs orientation: forward

Symbol	Name	Function Class
Ankrd10	ankyrin repeat domain 10	1240 bp upstream
Cpgi20087	CpG island 20087	330 bp distal
Gm45592	predicted gene 45592	285 bp upstream
Gm64331	predicted gene, 64331	within coordinates
Mir7238	microRNA 7238	1261 bp upstream
Rr400761	regulatory region 400761	979 bp downstream
Rr659601	regulatory region 659601	1617 bp distal
Rr659602	regulatory region 659602	1916 bp distal
Rr659603	regulatory region 659603	750 bp distal
Tssr80389	transcription start site region 80389	1949 bp upstream
Tssr80390	transcription start site region 80390	1918 bp upstream
Tssr80391	transcription start site region 80391	1352 bp upstream
Tssr80392	transcription start site region 80392	1274 bp upstream
Tssr80393	transcription start site region 80393	1254 bp upstream
Tssr80394	transcription start site region 80394	1232 bp upstream