rs222585628 SNP Detail

Summary

• ID
  rs222585628
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:157269664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCTGATA GCTCTACTAC
  CCTGGACTCT GCTGATCTAG GACATGTCCT CTTCCTCTCT CCTCTTGTCC TGCACTACTG
  CATTCACAGA GGCCCCCTGT AGGAATATTC TCATCTCAGG TCCTTGGCAG TTTCTCGTTT
  TTTTCTGTTC TCTCTCTCTC TTTTCTTTCT TTCTCTTTTT TCCTTCCTCC CTCCCTCCCT
  T
  CCTTCCTTTC CTTCCTTTCC TTTCTTTCCT TCTTTCTTTC TTTCTTTCTT TCTTTCTTTC
  TTTCTTTCTT TCTTTCTTTC TTTCTTTCAA GTTTTTCTCC AGGAACCGCA AGCTAACGCT
  CTCTCTCCCA CCACATCTCT GTCCAATCGC ATCATAACTC TCCCAGGTGG CCTTACTTTA
  ATCTACTCCC CAACTCCAGG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	FVB/NJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352060311	MGP_WTSI_1_159372225	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	FVB/NJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222585628					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352060311	MGP_WTSI_1_159372225	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:157269664 () rs orientation: forward

Symbol	Name	Function Class
Gm70539	predicted gene, 70539	within coordinates
Gm71050	predicted gene, 71050	1533 bp upstream
Rr421381	regulatory region 421381	1544 bp distal
Rr421382	regulatory region 421382	1460 bp distal
Rr421383	regulatory region 421383	1124 bp distal
Rr421384	regulatory region 421384	853 bp proximal
Tssr9590	transcription start site region 9590	1438 bp downstream