rs222588681 SNP Detail

Summary

• ID
  rs222588681
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90920994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTC TTCCAACCAA GGATCTGTAA
  T
  GCAATTCCTT CCCTTTCCCC TCTTT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321608316	CHEV_5_91202161	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222588681					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90920994 () rs orientation: forward

Symbol	Name	Function Class
Pf4	platelet factor 4	within coordinates
Rr125443	regulatory region 125443	393 bp distal
Rr130456	regulatory region 130456	207 bp proximal
Rr130457	regulatory region 130457	1943 bp proximal
Tssr47187	transcription start site region 47187	1505 bp downstream
Tssr47188	transcription start site region 47188	1064 bp downstream
Tssr47189	transcription start site region 47189	655 bp downstream
Tssr47190	transcription start site region 47190	626 bp downstream
Tssr47191	transcription start site region 47191	584 bp downstream
Tssr47192	transcription start site region 47192	52 bp upstream