rs222591487 SNP Detail

Summary

• ID
  rs222591487
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79897653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCCATCA TTAGGGAAGC
  TGAAACAAAA AGATTACGTG TGTTCTAGAC CAGCTTGGAC TACAACGTGA GACCCTGCCC
  CCCATCAAAA ATCATATAAC TATGGGCTGA TGAGATGGCT CAGCTGGAGA AGAGGGCTTG
  TTGCTCAAGC ATGAGGGCCT TGAGTTTGAA CCCATAGTGC TCACATTAAC ACAACAAAAC
  R
  AAAGATGGCT GTGGGGTTGT GGTGGTGGCC AGTGCCTTTG ATCCCATCAC TCAGGAGGCA
  GATGCAAGCA GATCTCTCAG TTCAAGACCA TCCTGGTCTA TAGAGCAAAA TCCAGGACAG
  CTAGGACTAC ACAGAAATCC TTTCTAGGAA ATCTAAAAGG AAAGGCCAGA GCAATATTAA
  CCTTTGCTTC AATAGAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322280554	CHEV_7_87392791	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222591487					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79897653 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19326	CpG island 19326	1100 bp distal
Gm73873	predicted gene, 73873	1407 bp upstream
Rr168083	regulatory region 168083	652 bp distal
Rr400401	regulatory region 400401	1409 bp downstream
Tssr2310	transcription start site region 2310	1541 bp downstream
Tssr67422	transcription start site region 67422	1534 bp downstream
Tssr67423	transcription start site region 67423	1476 bp downstream
Tssr67424	transcription start site region 67424	1471 bp downstream
Tssr67425	transcription start site region 67425	1449 bp downstream
Tssr67426	transcription start site region 67426	1385 bp downstream
Tssr67427	transcription start site region 67427	1326 bp downstream
Ttll13	tubulin tyrosine ligase-like family, member 13	within coordinates