rs222591754 SNP Detail

Summary

• ID
  rs222591754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:118531945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTGCTCCT CATCAGGCAG TACCCAGGGA
  AGTGTGTCCT GAACCTTCCA TTAGATGGAG TGTGGGACAG GCCAGTGAGC AGCCACAGCA
  GCCATGCTGA GTGAACCATG GGGATGCAGG AGGTCCCACA CGTGAGGCCT GCCCCTCCCT
  Y
  CCTCCTGTGA GGGTCAGCAA TGCCCTCCAG AAGCCCTCAG TGACCCCCGA gggctgctga
  gaggcccagc aggtaaaagt gcttgctaca gagcctgagg atctgagctt gatcgctcgg
  ctccacgtgg tgaaaattcc tacgttctga                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323216699	CHEV_9_118611995	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222591754					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:118531945 () rs orientation: forward

Symbol	Name	Function Class
Itga9	integrin alpha 9	within coordinates
Rr688309	regulatory region 688309	1400 bp distal
Tssr87646	transcription start site region 87646	471 bp upstream
Tssr87647	transcription start site region 87647	498 bp upstream
Tssr87648	transcription start site region 87648	514 bp upstream
Tssr87649	transcription start site region 87649	558 bp upstream
Tssr87650	transcription start site region 87650	600 bp upstream
Tssr87651	transcription start site region 87651	618 bp upstream
Tssr87652	transcription start site region 87652	895 bp upstream
Tssr91958	transcription start site region 91958	1008 bp upstream