rs222591861 SNP Detail

Summary

• ID
  rs222591861
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105291640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGCAAGC GACAGCATGG
  GGTCTGCATT TATTACTGTT TTACAGGAGA TGGAGCACAA GTACTTGTGC TTGCCAGGCA
  AGAACTTTTT TTTTTTTTTT TTTTTTAATG TCAGGCTATA AACCATTCTT AGTGCTCAAT
  GGCTTCTGGA CACTGAGCAT AGAAAGAGCC ACTTGCTCTT TGCCCCAATG TCACAGGCAG
  R
  GCTGAGCAGC TAGGCCAGGT CTGTGGTGCT GATCTAGGAC AGCATCTTCA GGGCAGCAGG
  CAGGAACTTG TAACAACTAA GCTCCCCACT TCCTCTTCAC TGCTTCCCGT AATTCCATCC
  CATCCCTTCC CTTCCAGTAT TGCATCAGGT GACCAGCTTT CTTTTTTCTT TTTTCTTTTT
  TTTAAACAGA GGAATTAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322370129	CHEV_7_112790947	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222591861					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105291640 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19541	CpG island 19541	1212 bp distal
Gm22504	predicted gene, 22504	within coordinates
Gm45799	predicted gene 45799	within coordinates
Rr400513	regulatory region 400513	1885 bp downstream
Rr652795	regulatory region 652795	1833 bp distal
Rr652796	regulatory region 652796	1968 bp proximal
Timm10b	translocase of inner mitochondrial membrane 10B	within coordinates
Tssr68382	transcription start site region 68382	1919 bp downstream
Tssr68383	transcription start site region 68383	1847 bp downstream
Tssr68384	transcription start site region 68384	1624 bp downstream
Tssr68385	transcription start site region 68385	1406 bp downstream
Tssr68386	transcription start site region 68386	1363 bp downstream
Tssr68387	transcription start site region 68387	91 bp downstream
Tssr68388	transcription start site region 68388	182 bp upstream