rs222595863 SNP Detail

Summary

• ID
  rs222595863
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47261142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGGATTT ACTCTTCCAC
  TGCCAGGGCT GCTCCTTCCT ATTGTCATCA ATGAACTCGG TCCTTCCCAT CACTTATCTC
  TGGTCAAGTA TTTCTCTTAC CTCCAGGCCA TCACTGTTTT GATACCATTC TCATCCGTTC
  CTTTATAAGT ACCGAATCCT CTGTCCATCA TAACAGGCCT GCCATCTTGA AGACGAGACT
  R
  TAGTTGAGAC ATTAAGCAAA AATACATAGA TTGTGTGGTA GTGATGCAGC AGTCACAGGG
  GGATCTGGAG TACCAGCAGG GGGGCTTTCC TTTTAAAAGG TCAGTGATTA AAGGAATGAG
  AGCGGAGAGA GACATGGTAT GCTCTAAAGG ATTATCTAAG CTGGGCAGTG GTGGCGCACA
  CCTTTAATCC CAGCACGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388517826	MGP_WTSI_13_47203034	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222595863					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388517826	MGP_WTSI_13_47203034	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47261142 () rs orientation: forward

Symbol	Name	Function Class
1700026N04Rik	RIKEN cDNA 1700026N04 gene	within coordinates
Cpgi5551	CpG island 5551	806 bp distal
Dek	DEK proto-oncogene	1465 bp upstream
Rr479039	regulatory region 479039	1230 bp distal
Rr479040	regulatory region 479040	608 bp distal
Rr479041	regulatory region 479041	1083 bp proximal
Tssr119627	transcription start site region 119627	1255 bp downstream
Tssr119628	transcription start site region 119628	1236 bp downstream
Tssr122372	transcription start site region 122372	1964 bp upstream
Tssr122373	transcription start site region 122373	1919 bp upstream
Tssr122374	transcription start site region 122374	1791 bp upstream
Tssr122375	transcription start site region 122375	1556 bp upstream
Tssr122376	transcription start site region 122376	1538 bp upstream
Tssr122377	transcription start site region 122377	1495 bp upstream
Tssr122378	transcription start site region 122378	1460 bp upstream
Tssr122379	transcription start site region 122379	1445 bp upstream
Tssr122380	transcription start site region 122380	1433 bp upstream