rs222600085 SNP Detail

Summary

• ID
  rs222600085
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:93203371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAGATAGT TTACCATGAC
  TGGCCCATTA AAGTCTTCCT TCCTGCCCAA TGTAAGAATT AAGCTATAAA TTATAAATGG
  AATAGGACTC TTTTAATCCC TATGCTCTGG CAATGTGAAG ATTTCGGTAC CTCTCAAGAG
  TAAGATTAAT GCTGTGGCCC TCATCTTTTA CCATTTTCAG TAGTTTCTTT AAAAAAAAAA
  H
  AAAAAAAAAA AACTGGAATA TAGCCCTATT CATTAATGCT TGTGGTAGGA TTAAGTGTTT
  CCATGAATAT TTAATTTTTC ATGAAGATAA CGTAATTAAA ATATACAATT CTCTAATATA
  CAACAACAAC AGAACTGGGG AGGCGGCTCA GTCAGTAAGA TGTCTGCCAT GTAAGCATGA
  GAAGCCGAAT TTGGTCCCTA                                            
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	I/LnJ	LEWES/EiJ	LG/J	NON/ShiLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	SJL/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss395007360	MGP_WTSI_15_93135921	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	A	C	C	C	C	C	C	T	A	C	C	C	A	A	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	I/LnJ	LEWES/EiJ	LG/J	NON/ShiLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	SJL/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs222600085					SNP	C	C	C	C	A	C	C	C	C	C	C	T	A	C	C	C	A	A	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395007360	MGP_WTSI_15_93135921	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:93203371 () rs orientation: forward

Symbol	Name	Function Class
Gm52193	predicted gene, 52193	1325 bp downstream
Yaf2	YY1 associated factor 2	within coordinates