rs222604479 SNP Detail

Summary

• ID
  rs222604479
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30737799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCAGGCTG ATCTTAAGCT
  TTTAATCCTC TTGCCAGAGC CTCCTTGTGC TGGCATAAAA CAACTTTTAT GTTATCTGGG
  ATTGAACTCA GAATCTTGTA CATGATAAGC CCAGTACCAC TGAGCCACAC CCCAGCTCCT
  CACTGGGGGA TTCTAGGCAG GGGCTCTACC ACTGAGCCAC ACCCCAGCCC CTCACTGGAG
  G
  ATTCTAGGCA GGGGCGCTAC CACTGAGCCA CGCCCCCAGC CCCTCACTGG AGGATTCTAG
  GCAGGGGCTG TACCACTGAG CCACGCCCCC AGCCCCTCAC TGGAGGATTC TAGGCAGGGG
  CTGTACCACT GAGCCACGCC CCCAGCCCCT CACTGGAGGA TTCTAGGTAG GGGCTCTACC
  ACTGAGCCAT GCCTTCAGCA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	LEWES/EiJ	MA/MyJ	QSi3/Ianm	QSi5/Ianm	SPRET/EiJ	SWR/J
ss370920929	MGP_WTSI_7_31823393	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	LEWES/EiJ	MA/MyJ	QSi3/Ianm	QSi5/Ianm	SPRET/EiJ	SWR/J
rs222604479					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370920929	MGP_WTSI_7_31823393	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30737799 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	within coordinates
Gm71772	predicted gene, 71772	1061 bp downstream
Mir7050	microRNA 7050	1884 bp downstream
Tssr65831	transcription start site region 65831	1366 bp downstream
Tssr65832	transcription start site region 65832	957 bp downstream
Tssr65833	transcription start site region 65833	518 bp downstream
Tssr65834	transcription start site region 65834	487 bp downstream
Tssr71891	transcription start site region 71891	1875 bp upstream
Tssr71892	transcription start site region 71892	1280 bp upstream
Tssr71893	transcription start site region 71893	507 bp upstream
Tssr71894	transcription start site region 71894	484 bp upstream
Tssr71895	transcription start site region 71895	455 bp upstream
Tssr71896	transcription start site region 71896	425 bp upstream
Tssr71897	transcription start site region 71897	685 bp downstream
Tssr71898	transcription start site region 71898	1834 bp downstream