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rs222605060 SNP Detail
Summary
  • ID
    rs222605060
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr17:28218630 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CACACAAAAT AACAACCAAA
    ACTGGGAAAT GCCTTCACGT CTGAAGATGT GCACTCCTGC TTATTTAGTC TCTGGCATGC
    CTATGGTTTT GTGGCTGGTG TTTTGTTTTT GTCAATTTTC TTTTTCACAA TTAATTTTCT
    TTTTTAAAAT TAATGGTGTC TGCCTGAGGT AGTGCATGCG ACGGTAGTCC CTGTTATTTG
    R
    AGAGCAGAGG CCAGAGGGTC TTTTAAGTCT GGGAGTTGAA GAGCATCTCA GATGTTACAC
    TGTGATGTGG CAGACAGGTG GCCCTGAGAG GGGAGGCTGG GAGGTGAGCA GCAGGTGAGT
    AGAGATAAAG CGCCTGCGAA GCTCCCTCGC TGTGCCCGTG GCCGCCAGCC TCCTTGTAGC
    TGCTACACTG TATCTGAAGG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss325351141 CHEV_17_28136601 CHEVERUD SCREENING_POP f SNP A G
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs222605060 SNP A G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:28218630 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Anks1 ankyrin repeat and SAM domain containing 1 within coordinates
Gm35290 predicted gene, 35290 1409 bp downstream
Rr340974 regulatory region 340974 1431 bp distal
Rr340975 regulatory region 340975 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory