rs222605068 SNP Detail

Summary

• ID
  rs222605068
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:73189398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACCCAGTA ATGACAAAAG
  CAACTTAAAA GAGATCCAAA ATTGTAACTA CTCAATTTGT ATAGAAATTT GGAAATGTAT
  TTTTTAACGC AAGGCTCAAA ATATTTTTAG TAAAGAGTAA ACTCATCAAT TTGTAAAAAA
  CTATATTCCA CACTTCAAAA TTTAAAAGCT AATTTAAACA AGAATTTTAT GTAAAATTAT
  R
  AAGTAAAATC AAAATTGGAT CATATACCAA TCACATTCTT GTTAGCTGCA TGATTTTAAA
  ACTATGACAT GACAATTCTT AAGAACACAT CCAGAAATGC ATTCACATTT TTAAATTAAC
  ATAAAGATAC AGTCATACAA CAAAAAATAT CTTATATGCT TTATTACTTC AGCCACTGAT
  AAGCTACTTC AAAGAATGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371882676	MGP_WTSI_7_80684536	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222605068					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371882676	MGP_WTSI_7_80684536	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:73189398 () rs orientation: forward

Symbol	Name	Function Class
Chaserr	CHD2 adjacent suppressive regulatory RNA	148 bp downstream
Chd2	chromodomain helicase DNA binding protein 2	within coordinates
Cpgi19266	CpG island 19266	1492 bp distal
Gm44686	predicted gene 44686	within coordinates
Rr167999	regulatory region 167999	within coordinates
Rr380950	regulatory region 380950	936 bp downstream
Rr380951	regulatory region 380951	1662 bp upstream
Tssr67202	transcription start site region 67202	1680 bp downstream
Tssr67203	transcription start site region 67203	1592 bp downstream
Tssr67204	transcription start site region 67204	1558 bp downstream
Tssr67205	transcription start site region 67205	272 bp downstream
Tssr72947	transcription start site region 72947	1884 bp upstream
Tssr72948	transcription start site region 72948	377 bp upstream
Tssr72949	transcription start site region 72949	1238 bp downstream
Tssr72950	transcription start site region 72950	1435 bp downstream
Tssr72951	transcription start site region 72951	1775 bp downstream
Tssr72952	transcription start site region 72952	1846 bp downstream