rs222617160 SNP Detail

Summary

• ID
  rs222617160
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32876368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGGCTTTC TCTGCTCCAG
  CTGTTTTCTT GTGGTCTCTC CTGGATTCTT TCCCTGTGAC TAATTCTCAT TTTTTTCTCT
  CTCCTGCCCC ATTTCCTGGA AGGAAGTCCT GCCCTATCCT CTCCCCTGAC CAGTTATTCA
  TCAGATTTTA TTGACAAATC GGGGAATAAT TCAGGAGCAA TGTTTTTACA ACATTGAGAC
  R
  GGAGATAGTT AGAATACAGA CTGCAACCAG ATATGGGGGC ATAGAAATCA AGATTGAATT
  ACACAGCGCA CAGTAACATG CCTACACATT CCAAATTCTA AGGGGGTAGG TATGGGCAGA
  TAAACGTCCA TGTTCCTTTG GTCTGGGTGG GATGCCTAAG AAGCATGCTC AGTACTGTGT
  CTCCAAGAGC CCCATCTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398036765	MGP_WTSI_17_32794339	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222617160					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398036765	MGP_WTSI_17_32794339	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32876368 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f40	cytochrome P450, family 4, subfamily f, polypeptide 40	1506 bp upstream
Gm65897	predicted gene, 65897	34 bp downstream
Rr525786	regulatory region 525786	734 bp proximal
Rr525787	regulatory region 525787	1277 bp proximal
Rr525788	regulatory region 525788	1517 bp proximal
Tssr143725	transcription start site region 143725	1484 bp upstream
Tssr143726	transcription start site region 143726	1572 bp upstream
Tssr143727	transcription start site region 143727	1595 bp upstream
Tssr143728	transcription start site region 143728	1615 bp upstream
Tssr143729	transcription start site region 143729	1627 bp upstream
Tssr143730	transcription start site region 143730	1650 bp upstream
Tssr143731	transcription start site region 143731	1672 bp upstream
Tssr143732	transcription start site region 143732	1686 bp upstream