rs222622675 SNP Detail

Summary

• ID
  rs222622675
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152779396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTAAAAGCC AGAAGTCGAA ATGGTTATCC
  GAGTAGGAAA GTCCATTTCT TCCTCCCTTA CTCTCCCAGC AAAAATTGGG GGAGACCCCG
  AAGCATTCAT TTTAGGCATT GCCAGTCCCC CAAGGGTGGA AACCACCTCC ATCGTTGCCT
  M
  TCTGAGCCGG GTAGGGAGAG GGCCGGGCCC GAGAAGAAAA GGCAGGTTAT GAAGGCCGGC
  GGCGAGTGGG TGGGAACGAG AAAGCGAGGG CGATGCTGCG AAGTCAGAGG AAAGGGAAGG
  GGCTTCCCCA CCACTGTTTG AGGCTGGGCA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320068823	CHEV_1_154750775	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222622675					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152779396 () rs orientation: forward

Symbol	Name	Function Class
Cpgi860	CpG island 860	within coordinates
Cpgi861	CpG island 861	1041 bp proximal
D1Mit502	DNA Segment, Chr 1 Massachusetts Institute of Technology 502	1884 bp distal
Gm70930	predicted gene, 70930	412 bp upstream
Rr396386	regulatory region 396386	1018 bp downstream
Rr396387	regulatory region 396387	212 bp downstream
Rr396388	regulatory region 396388	888 bp upstream
Rr420557	regulatory region 420557	1034 bp distal
Rr420558	regulatory region 420558	509 bp distal
Rr420559	regulatory region 420559	within coordinates
Rr420560	regulatory region 420560	423 bp proximal
Smg7	SMG7 nonsense mediated mRNA decay factor	999 bp upstream
Tssr9437	transcription start site region 9437	772 bp downstream
Tssr9438	transcription start site region 9438	723 bp downstream
Tssr9439	transcription start site region 9439	158 bp upstream
Tssr14242	transcription start site region 14242	976 bp upstream
Tssr14243	transcription start site region 14243	895 bp upstream
Tssr14244	transcription start site region 14244	866 bp upstream
Tssr14245	transcription start site region 14245	558 bp upstream
Tssr14246	transcription start site region 14246	527 bp upstream