rs222629813 SNP Detail

Summary

• ID
  rs222629813
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:73622754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCTTCAC CATGGTGCGG
  CCTGGGGCGC CCTAGGCGGC GACGGCGAAG GCTGGGGTCG CGGCTGGCAG GATCCCGGCT
  GCGAAGGCAG CCTTGTCGGC CGAGCTCAGG GCACGACTCT GCAGCGGAGG AGCGGACTGC
  GCGACAGCAG CAGCGGCTCA GTGCAGCGCG GTTTCCGGCC TCGCAGCTGG GGCGCGGGCG
  Y
  AGGGCGGGGG CCCGGAGGGG CGGGGCCTTG AGCGGGGCGG GGCCTGGCTT CACGCCAGAC
  CCTCCCTGGT TCCCCCCACC CCCACCCAGG ACTCAGCGGG AATCTGGCCA GGCTTTGTGG
  AGGGCGCGCC TGGTTGAGCT AGGACTTGTT GCCCCTCTGG GCTGCCTGGA TTTTCCGGTT
  CTGAATTTGC TTCCAACTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391532721	MGP_WTSI_14_73785121	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222629813					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391532721	MGP_WTSI_14_73785121	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:73622754 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6725	CpG island 6725	within coordinates
Gm62304	predicted gene, 62304	1631 bp upstream
Itm2b	integral membrane protein 2B	25 bp upstream
Rr297487	regulatory region 297487	within coordinates
Tssr126560	transcription start site region 126560	286 bp downstream
Tssr126561	transcription start site region 126561	252 bp downstream
Tssr129741	transcription start site region 129741	1882 bp upstream
Tssr129742	transcription start site region 129742	957 bp upstream
Tssr129743	transcription start site region 129743	3 bp upstream