rs222631790 SNP Detail

Summary

• ID
  rs222631790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:134271934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGAATGA ATGAACTACG
  ATGAACTCCT AGCTCTGCTC CAACGCTCTC CACCAGGTCA GAACTGGGGT TTCCGCACTT
  CACACCAGTG AGTACATGTG TGGTGTCTGA CTATTTGTGT TAGATCCAGG CCTAGAGGGC
  TATAAGGATT TGTGGTGTGT GTGTTCGCGC GTGCACGCTT GTGTGTGAAA AGATAGCACT
  Y
  TGTGAGGTGC AGGGTACAGT GTTCAGGATG GTGTGCGTGG TGTGTGTGTG TTGTGTGTGT
  GTGTGTGTGT GTATGTGTGT ACCCTGTATG GTACAGAGTG CAGAGTGTTT GGGATGCTGG
  GTGCTCGGTG TTCAAAGTAG AGTGTGGGTA AAGAGTGCTG GATGCGGTGC AGAGTAGACA
  GTGCAGGGTG AGGACCATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322457597	CHEV_7_141861888	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222631790					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:134271934 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19845	CpG island 19845	within coordinates
Dock1	dedicator of cytokinesis 1	482 bp upstream
Rr656983	regulatory region 656983	372 bp distal
Rr656984	regulatory region 656984	within coordinates
Rr656985	regulatory region 656985	493 bp proximal
Tssr69615	transcription start site region 69615	499 bp downstream
Tssr69616	transcription start site region 69616	445 bp upstream
Tssr69617	transcription start site region 69617	462 bp upstream