rs222634497 SNP Detail

Summary

• ID
  rs222634497
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:24023397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGAATTT ATGAGAAGCT
  TGTGGGTTTT GTCCATTTGA TTTGGTTAAC AACGTTACTA AATAAGATTA TGGCCCACAT
  AGTTCAAAGA AGCAAAAGAA AATTAAAGAC CAGACAAAAA AAAGAGGGGG TAAAGTACAA
  AATGTGTTTA ATTTGTAACT TATCCCATTT CAAACCGGAA AAAGGAAATG TCTTTAGAAA
  Y
  ACTGCAAGGC AATGTGACTA ATAACTGCCT GCAGGTGTCA GACCCAGTAG ATCCTTCTGG
  GGTGCTGGCA AGACACTGGA CAAGGACGAA GGCTGTGAAG CTCACAGCTG AAAGCAGGGG
  GTGCTTCAGC CTGTCATTAA TGATTAATAA TTGGAGTCAT GGAGTGACAC AGAATACTGA
  GTGGTCTGGT AAGAGGTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324292297	CHEV_13_23931283	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222634497					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24023397 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm56568	predicted gene, 56568			1015 bp downstream
Rr475960	regulatory region 475960			24 bp proximal
Rr475961	regulatory region 475961			107 bp proximal
Slc17a3	solute carrier family 17 (sodium phosphate), member 3			Intron
				Noncoding-Transcript-Variant
Tssr4011	transcription start site region 4011			211 bp upstream
Tssr4012	transcription start site region 4012			309 bp upstream
Tssr118875	transcription start site region 118875			within coordinates
Tssr118876	transcription start site region 118876			31 bp upstream
Tssr118877	transcription start site region 118877			163 bp upstream
Tssr118878	transcription start site region 118878			184 bp upstream