rs222634912 SNP Detail

Summary

• ID
  rs222634912
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:121335687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGAGCTA CGTTCTGCTA
  GGCACAGCTC AAGGCCCTGG TGGCCTCTAC CCATTTTCTT GGGCCTCATG TAGGTGTGGA
  TGGATGCGGG CACCCAGATC TTCTTTTCCT TTGCCATCTG CCAGGGGTGC CTGACAGCCC
  TGGGCAGCTA CAACAAGTAC CACAACAACT GCTACAGGTG AGATCTGCTG GTGTGGCGGG
  K
  GAGGGCAACC CTGCCTCCAC AGGAGCTGAG CAGGGCTCAT GTGGACACCT TTCCAAGACT
  CAGCTTCTTT CCCCTACTTT GCTGGTCTTC TCTTGCCCTG ACATCTGGTG TTTGTTTGTG
  TTGCCTGTGC CATATCACAC TCCCTGCTCC CCCCATCTTT CTTCCATGTC TTTCTGTTTC
  TTGTTCCCTT CTTCCTCCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369888325	MGP_WTSI_6_121308746	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222634912					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369888325	MGP_WTSI_6_121308746	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:121335687 () rs orientation: forward

Symbol	Name	Function Class
Slc6a12	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	within coordinates
Tssr58614	transcription start site region 58614	1912 bp downstream
Tssr58615	transcription start site region 58615	1881 bp downstream
Tssr58616	transcription start site region 58616	1851 bp downstream
Tssr58617	transcription start site region 58617	1836 bp downstream
Tssr58618	transcription start site region 58618	1825 bp downstream
Tssr58619	transcription start site region 58619	1802 bp downstream
Tssr58620	transcription start site region 58620	1179 bp downstream
Tssr58621	transcription start site region 58621	520 bp upstream
Tssr58622	transcription start site region 58622	766 bp upstream
Tssr58623	transcription start site region 58623	953 bp upstream