rs222637572 SNP Detail

Summary

• ID
  rs222637572
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:143120533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATTGCTT TATGCTGATT
  AAAGACTAAG AATGGCCTGT TGGTGTAGGT TTGTAATCCA GCTCTGATCT CTCATCCCAG
  TCCTCTGGAT TCTGAATGAG TTGTGAATCC AGTGGGGCCA GTCTGAGCAG TATAGGCAGA
  CTGTCAGAAC AACAGTGACT AAAAGAAGTA ACAACCCCAG TCTTACCTCT TCCTCTACCC
  Y
  CGAGACAGAT TCCCAAGACC ATAACATTTA TATTTTAACC ACAATTTTGT ATTGTTTGTA
  CCACTTTTCT TGTTGAATAG TCTTGTAAAA TTTAGTCATA AGAAAATCTT CGTTAGTCTT
  AATATTATAA ATTGTGGAAA TTGAAACTCT GCCCCTATGT TTGACTTGAA AACAACCTTT
  ATAGAACATT TTTGTATACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404807870	MGP_WTSI_X_140772080	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222637572					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404807870	MGP_WTSI_X_140772080	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:143120533 () rs orientation: forward

Symbol	Name	Function Class
Alg13	asparagine-linked glycosylation 13	within coordinates
Rr395738	regulatory region 395738	948 bp downstream
Rr395739	regulatory region 395739	87 bp upstream
Rr694213	regulatory region 694213	791 bp proximal
Tssr162278	transcription start site region 162278	1706 bp downstream
Tssr162279	transcription start site region 162279	1610 bp downstream
Tssr162280	transcription start site region 162280	1538 bp downstream
Tssr162281	transcription start site region 162281	1514 bp downstream
Tssr162282	transcription start site region 162282	1483 bp downstream
Tssr162283	transcription start site region 162283	1461 bp downstream
Tssr162284	transcription start site region 162284	1445 bp downstream
Tssr162285	transcription start site region 162285	1429 bp downstream
Tssr162286	transcription start site region 162286	1399 bp downstream
Tssr162287	transcription start site region 162287	1387 bp downstream
Tssr162288	transcription start site region 162288	1368 bp downstream
Tssr162289	transcription start site region 162289	1340 bp downstream
Tssr162290	transcription start site region 162290	1308 bp downstream
Tssr162291	transcription start site region 162291	840 bp downstream