rs222638161 SNP Detail

Summary

• ID
  rs222638161
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:63081638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCACCCCAA GCATATTATA AGTATTAAAC
  AAGTGCAGTC CTCATTTTAG CTTAACACTC GATGAGAGAG CAGCTTGCTT TGAGGTCTTA
  CTAACTTTTG TTTTTCTCCT CAGACATAGG GTACCTCCCA GTTTCCAGTG TTTCAGAAGG
  R
  ACTTTTGTAT TGAAACTGGA AGACCAAGGT CATTCCAAGC ATGTTGTGCT GGGGCAATGC
  ATCCTATGGA CAACTAGGTT TGGGAGGAAT TGATGAAGAA ATTGTACTAG AGCCCAGGAG
  AAGTGACTTT TTCGTGAACA AAAAGGTCCG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323333178	CHEV_10_62708607	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222638161					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:63081638 () rs orientation: forward

Symbol	Name	Function Class
1700120B22Rik	RIKEN cDNA 1700120B22 gene	1706 bp upstream
Cpgi1647	CpG island 1647	1281 bp distal
Gm66860	predicted gene, 66860	1652 bp downstream
Herc4	hect domain and RLD 4	within coordinates
Rr432766	regulatory region 432766	1926 bp distal
Rr432767	regulatory region 432767	1243 bp distal
Rr432768	regulatory region 432768	740 bp distal
Rr432769	regulatory region 432769	893 bp distal
Rr432770	regulatory region 432770	1654 bp proximal
Tssr93752	transcription start site region 93752	1895 bp downstream
Tssr93753	transcription start site region 93753	1873 bp downstream
Tssr93754	transcription start site region 93754	1846 bp downstream
Tssr97911	transcription start site region 97911	1689 bp upstream