rs222639695 SNP Detail

Summary

• ID
  rs222639695
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129271020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGACTTC TAGGTGTTGG
  CGGCGTGTGT GGTTGGGTGC CCGCTAGGTG TGAATCCTAT TCCAAACACG TCTCGCAAAG
  ACGTGGATTA CGAATAACCG CACGGTCAAG GGCGAGTAAG CGCGCCAGAG CGCGAAGGGA
  CTAAAGCCGA CAGTGTCTCC AGGTGGGAGA TGCCAGGGAC ATTCTGCCGC GGGGCCAGCT
  R
  GGGCTCCATA TTTCTGCCCT CGGTTCTAAG CCCAGAACTG TCGCGTCGTG ATGGAAAACC
  AGAGAGTGGA GGGCGGAGTG AGACCGCCGG GCTGCAGCGC CCCGCGCCCC GCGCCCGACG
  TCTGCAGACA CGCCCGGCCC CGTGGCGCCG CCTCGCCGCC GCGGCCGTCA GGAGGCTCGG
  GCGCCTTCCC GCCTTTCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312493	CHEV_4_129054471	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222639695					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129271020 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14890	CpG island 14890	within coordinates
Rr377176	regulatory region 377176	1400 bp downstream
Rr600215	regulatory region 600215	within coordinates
Rr600216	regulatory region 600216	333 bp proximal
Rr600217	regulatory region 600217	879 bp proximal
Tssr39144	transcription start site region 39144	1881 bp downstream
Tssr43496	transcription start site region 43496	1201 bp upstream
Tssr43497	transcription start site region 43497	599 bp downstream
Tssr43498	transcription start site region 43498	620 bp downstream
Tssr43499	transcription start site region 43499	706 bp downstream
Tssr43500	transcription start site region 43500	1769 bp downstream
Zbtb8a	zinc finger and BTB domain containing 8a	within coordinates