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rs222660145 SNP Detail
Summary
  • ID
    rs222660145
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:79491560 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACCGTGCCCA CGCCCTTGAA
    CCTTACTTCT TGACGTCTCC TTCCATGTAC TCGCTGCGGT AGAAGCCAGC CAGGTCATCA
    GCCAGTTCCC CCTGGAACTG GCTGTCCATC TCGTACTGAC GGCCCTCTAC CAGGGACCCC
    TGCAGGTGCA CCACCAGGTA CTCAGTACGC TCTACCAGTT CCGTTTTGTC AATGTTAGGT
    R
    CCGGAGTGCC GTCCAGGGTT CGCAACACCA CCCTGTGGTT TCCTTTGAGG GTGTAGTTGA
    GCTTTTTGCT GTGGATGATA ATGACATCCG TGGTCTGGTT GCAGGTAAAG CGAACAGTAC
    TGTTGCCTTG GAAGATGTAC AGGCCCTGAT TGTTGGGGGT GAGGTAGGGT CTCAGGATCA
    CCCGGTAGGA GTCAGGTATA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss372032946 MGP_WTSI_7_86986698 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222660145 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss372032946 MGP_WTSI_7_86986698 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:79491560 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Anpep alanyl aminopeptidase, membrane within coordinates
Gm71751 predicted gene, 71751 607 bp upstream
Tssr67371 transcription start site region 67371 17 bp upstream
Tssr67372 transcription start site region 67372 205 bp upstream
Tssr67373 transcription start site region 67373 665 bp upstream
Tssr67374 transcription start site region 67374 711 bp upstream
Tssr67375 transcription start site region 67375 745 bp upstream
Tssr73161 transcription start site region 73161 895 bp upstream
Tssr73162 transcription start site region 73162 837 bp upstream
Tssr73163 transcription start site region 73163 816 bp upstream
Tssr73164 transcription start site region 73164 653 bp upstream
Tssr73165 transcription start site region 73165 107 bp upstream
Tssr73166 transcription start site region 73166 75 bp upstream
Tssr73167 transcription start site region 73167 122 bp downstream
Tssr73168 transcription start site region 73168 134 bp downstream
Tssr73169 transcription start site region 73169 162 bp downstream
Tssr73170 transcription start site region 73170 193 bp downstream
Tssr73171 transcription start site region 73171 264 bp downstream
Tssr73172 transcription start site region 73172 292 bp downstream
Tssr73173 transcription start site region 73173 308 bp downstream
Tssr73174 transcription start site region 73174 396 bp downstream
Tssr73175 transcription start site region 73175 417 bp downstream
Tssr73176 transcription start site region 73176 475 bp downstream
Tssr73177 transcription start site region 73177 505 bp downstream
Tssr73178 transcription start site region 73178 531 bp downstream
Tssr73179 transcription start site region 73179 595 bp downstream
Tssr73180 transcription start site region 73180 662 bp downstream
Tssr73181 transcription start site region 73181 745 bp downstream
Tssr73182 transcription start site region 73182 764 bp downstream
Tssr73183 transcription start site region 73183 803 bp downstream
Tssr73184 transcription start site region 73184 1463 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory