rs222663718 SNP Detail

Summary

• ID
  rs222663718
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28979442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCTCCAC TTCCTTTGGT
  AGCACTATAC AGCTAGAATG TGCCAGAGAC ATGCCTTTGT TTGCTGAGAA AAACCAGACA
  CCCATCCAAC CCAAAAAAAA AAAAAAAAAA CCCAAAACCT ATCAAAACTG GTGCCTCTGA
  CAAAGCTGTT GAAGCTTTCA AACAAAGAGC CCTTGATATA AGTGAGGGCA GCAGTTCACC
  R
  GCCTGAAGGC CGGCGTACTT CAAAAAGGTC GGTAAGTCTA GTCCGTTCAG AAGGACACGG
  CCTAGCCAAT CACTTTGTGT GACCTTCCAA AGGCCTATGA TGTCACCACC ACATCAGGCC
  GGTTCTAGGC TCAGACAACG CAAGAGCTTA GAAAAGCCAT ATCCACAGCC ACAGGCCAGG
  TAACTTATAG ACACAAGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370878642	MGP_WTSI_7_30065036	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222663718					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370878642	MGP_WTSI_7_30065036	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28979442 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18754	CpG island 18754	1189 bp proximal
Gm73729	predicted gene, 73729	92 bp upstream
Rr155860	regulatory region 155860	842 bp distal
Rr167412	regulatory region 167412	within coordinates
Spint2	serine protease inhibitor, Kunitz type 2	within coordinates
Tssr2177	transcription start site region 2177	1563 bp downstream
Tssr2178	transcription start site region 2178	1752 bp downstream
Tssr2179	transcription start site region 2179	1804 bp downstream
Tssr2180	transcription start site region 2180	1883 bp downstream
Tssr71645	transcription start site region 71645	1599 bp downstream
Tssr71646	transcription start site region 71646	1897 bp downstream
Tssr71647	transcription start site region 71647	1921 bp downstream
Tssr71648	transcription start site region 71648	1962 bp downstream