rs222667528 SNP Detail

Summary

• ID
  rs222667528
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137178489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGT ATCAGCAGTG GTGGTGACAT
  M
  AGCAGTGGTT GTGACTTCAG AAGTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ
ss917727689	MGP_WTSI_5_137149641	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	C	A	C	C	A	C	C	C	C	A	C	C	A	C	C	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ
rs222667528					SNP	A	A	A	A	A	C	A	C	C	A	C	C	C	C	A	C	C	A	C	C	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917727689	MGP_WTSI_5_137149641	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137178489 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	373 bp upstream
Tssr1678	transcription start site region 1678	843 bp downstream
Tssr1679	transcription start site region 1679	1786 bp downstream
Tssr1680	transcription start site region 1680	1806 bp upstream
Tssr1681	transcription start site region 1681	1829 bp downstream
Tssr1682	transcription start site region 1682	1846 bp downstream
Tssr1683	transcription start site region 1683	1935 bp downstream
Tssr1684	transcription start site region 1684	1951 bp downstream
Tssr1685	transcription start site region 1685	1965 bp upstream
Tssr1686	transcription start site region 1686	1992 bp downstream
Tssr49309	transcription start site region 49309	137 bp upstream
Tssr49310	transcription start site region 49310	497 bp upstream
Tssr49311	transcription start site region 49311	511 bp upstream
Tssr49312	transcription start site region 49312	891 bp upstream
Tssr49313	transcription start site region 49313	1139 bp upstream
Tssr49314	transcription start site region 49314	1410 bp upstream
Tssr49315	transcription start site region 49315	1426 bp upstream
Tssr53919	transcription start site region 53919	within coordinates
Tssr53920	transcription start site region 53920	13 bp downstream
Tssr53921	transcription start site region 53921	168 bp downstream
Tssr53922	transcription start site region 53922	209 bp downstream
Tssr53923	transcription start site region 53923	250 bp downstream
Tssr53924	transcription start site region 53924	264 bp downstream
Tssr53925	transcription start site region 53925	302 bp downstream
Tssr53926	transcription start site region 53926	333 bp downstream
Tssr53927	transcription start site region 53927	482 bp downstream
Tssr53928	transcription start site region 53928	500 bp downstream
Tssr53929	transcription start site region 53929	537 bp downstream
Tssr53930	transcription start site region 53930	602 bp downstream
Tssr53931	transcription start site region 53931	627 bp downstream
Tssr53932	transcription start site region 53932	643 bp downstream
Tssr53933	transcription start site region 53933	681 bp downstream
Tssr53934	transcription start site region 53934	713 bp downstream
Tssr53935	transcription start site region 53935	764 bp downstream
Tssr53936	transcription start site region 53936	785 bp downstream
Tssr53937	transcription start site region 53937	875 bp downstream
Tssr53938	transcription start site region 53938	911 bp downstream
Tssr53939	transcription start site region 53939	965 bp downstream
Tssr53940	transcription start site region 53940	1141 bp downstream
Tssr53941	transcription start site region 53941	1181 bp downstream
Tssr53942	transcription start site region 53942	1240 bp downstream
Tssr53943	transcription start site region 53943	1405 bp downstream
Tssr53944	transcription start site region 53944	1454 bp downstream
Tssr53945	transcription start site region 53945	1464 bp downstream
Tssr53946	transcription start site region 53946	1485 bp downstream
Tssr53947	transcription start site region 53947	1593 bp downstream