rs222675046 SNP Detail

Summary

• ID
  rs222675046
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53379200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATAGACA AAAACAGGGC
  CTTGTACATT TCTTTTTTGT TTTAATAAAC CTTTTTGTTT ATTGAGCATA TTCACGCATA
  TCCATTCTAT TTGAATATGT TGTACATGTA CATGTACATA CTGTGTGTGT GTTTGTGTGT
  ATGTGTTTGT GTGTGTGTGT GTTTTTGTGT GTGTGTGTTT TACTCTGTTG GTGAAAACTC
  R
  GTGTAAAGGA GTCATGGTCC TTCATTAAGT TTCCATACAA GGCTGGTAAA TTTAGTTGTG
  AACTAAATTT GGATGCTGAT ATGTTTCTAT TCGGTCAACA GTCGTTGGCT TTAAGGAGAG
  CCTTACACAG GAAAGCACGT TTGGGACAAT GATGAAATCA CTCAGCATTT TAACACTGAG
  TTGGATTCCT GTGCACTACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324042720	CHEV_12_54433404	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222675046					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53379200 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr267616	regulatory region 267616	1801 bp distal
Rr267617	regulatory region 267617	600 bp distal