rs222686680 SNP Detail

Summary

• ID
  rs222686680
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101312126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAC ACAATTCATA GATTCACTAT
  W
  ATGTAACAAA CAAGATGGCT CAACT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322351563	CHEV_7_108811433	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222686680					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101312126 () rs orientation: forward

Symbol	Name	Function Class
Clpb	ClpB caseinolytic peptidase B	832 bp upstream
Cpgi19507	CpG island 19507	641 bp proximal
Rr400489	regulatory region 400489	578 bp upstream
Rr652442	regulatory region 652442	698 bp distal
Rr652443	regulatory region 652443	224 bp proximal
Rr652444	regulatory region 652444	1039 bp proximal
Rr652445	regulatory region 652445	1093 bp proximal
Tssr68257	transcription start site region 68257	684 bp upstream
Tssr68258	transcription start site region 68258	695 bp upstream
Tssr68259	transcription start site region 68259	716 bp upstream
Tssr68260	transcription start site region 68260	808 bp upstream
Tssr68261	transcription start site region 68261	822 bp upstream