rs222688313 SNP Detail

Summary

• ID
  rs222688313
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72438358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAACCAGG CCTGAGGCCA
  CATGGACAAA GCAAGAGAGT TTCAGGCCAA GGCAGGGAAC AGAGCACTCA AAAGACCACG
  CAATCCAAGC CAATCAGATT CACCACCCAC TAGAAGTCTG AAAGGTGGCA GGGCCTCCTA
  GCTCAAAGTC CATCCAGGAA AGTGGCCAGA AAATCTGACA GGGCCAAGTC TGATAGAAAC
  M
  CTGTCAGAGA AGTTACGGGC TGGGAGGCTC ATTACAGCCA CAGGCACTGA GAAAGGTCAG
  TGCGAGCTGT GCAGCTGTTC CATCTGGTGC CAGAGGCTTT GGCTGCTGTC TTCTACACCC
  AGGCGCTTAG CCTTCCTGAC CAGCCCCACC TAGAAAAGCT AATTCTTCTG CTCTTCTAAG
  AGGAATGATT TGTTGGAGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378020701	MGP_WTSI_9_72378883	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222688313					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378020701	MGP_WTSI_9_72378883	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72438358 () rs orientation: forward

Symbol	Name	Function Class
4930509E16Rik	RIKEN cDNA 4930509E16 gene	within coordinates
Cpgi22017	CpG island 22017	392 bp proximal
Rfx7	regulatory factor X, 7	1164 bp upstream
Rr401508	regulatory region 401508	418 bp downstream
Rr401509	regulatory region 401509	543 bp upstream
Rr682766	regulatory region 682766	600 bp distal
Rr682767	regulatory region 682767	655 bp distal
Rr682768	regulatory region 682768	99 bp distal
Rr682769	regulatory region 682769	74 bp proximal
Rr682770	regulatory region 682770	674 bp proximal
Rr682771	regulatory region 682771	875 bp proximal
Tssr86008	transcription start site region 86008	652 bp upstream
Tssr86009	transcription start site region 86009	857 bp upstream
Tssr86010	transcription start site region 86010	1108 bp upstream
Tssr86011	transcription start site region 86011	1138 bp upstream
Tssr86012	transcription start site region 86012	1711 bp upstream