rs222689238 SNP Detail

Summary

• ID
  rs222689238
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:11504463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCTTTCT TCCTGTCTTG
  ATCTCTGCCA CCATCCCTAT CTCTGCCACC ATCTCCTTCT CTGACATCTT CTCCATCTCT
  GACATCATCT CACCTCTTCC ATCACCTCCA TCTCTCCTGT CATTATGTCT GTCTTCCCAA
  TCTCTTGTCA TTTCTCTGTC ACCTTTATTA CTATCATCCC TATTTCATTT CTTCTTTAGT
  R
  TATCTTATTT TTTAATTCTT TATCATACTT TAGCAAAACA AAAATCATAT TTCATTGCAT
  ATAAATTTCC CAATAAAGAA AATAAGTTTT AAAATGGCAG CTAAGGTACA TGGTCGTTCA
  TTCTTACCTG TGGATTGGAT CACAATGGTG TTAACTATGG TATAGGAAAC TACAACCTGC
  TTTAGGTTAA GATTTCTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324264597	CHEV_13_11581844	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222689238					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:11504463 () rs orientation: forward

Symbol	Name	Function Class
D13Ertd463e	DNA segment, Chr 13, ERATO Doi 463, expressed	1460 bp distal
Rr387978	regulatory region 387978	208 bp upstream