rs222689746 SNP Detail

Summary

• ID
  rs222689746
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:130553358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCCCCCA GGTGCCCTGT
  GGGTGCTTGG GTATGCCTGG CCCCGGCGTG GTGAATGCAT GTAAATACTT CGTAGACAGT
  GTGGCTCCAG AGAGCCCCCT GAGACAGTGT CCCCCCCACC TTACTGGTTC ATCCTCTCTC
  CTGTACAGAG CCCTCCCAGC CCCTGGGCCA CCAGGATCAG GGGTTACCTC CCTTCCCCAG
  R
  CCTTTCCTAC CCGTTCTCTC CCTATAACCT GTTTATTAAC CAACCCTGTC CTGAGTTCAT
  GGCCAAAACT TAAATAAGAG AAGGAGGAGA GGGTCAGATG GATAAAGATA AAGATACCAA
  GGCCTGGTCC ATCCTTACCA TGGGCGCTCG TACACCCCTG GCTTGGGAAG GACAGGGCTT
  GCTTTGTTTT GTTTTCTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318879	CHEV_4_130381962	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222689746					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130553358 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	within coordinates
Sdc3	syndecan 3	mRNA-UTR
Tssr39293	transcription start site region 39293	169 bp downstream
Tssr39294	transcription start site region 39294	9 bp downstream
Tssr39295	transcription start site region 39295	140 bp upstream
Tssr39296	transcription start site region 39296	166 bp upstream