rs222702361 SNP Detail

Summary

• ID
  rs222702361
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26053912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCCACCT GGTGCCTGGC
  TCTAGCCACA TGGCCCTAGG GAGCAGGTCA AGGTGGAGGG GGGATATCGG CACCCAGCAG
  GTCATAGGCA AAGACGTTCC AGAAGATGGC GAAAAGCAGG AAGGTGCCAT AGGCAAGTAG
  CACCACCCAC CAGCCGCACT GGTCCCTCAG GCGTTCCTCA TAGCTCCGAA GGATGGTAAG
  R
  CCCATGCTTA CACCTACCAC TGCACCAGCC AGGTGTGCCA TGAAGCTGGG CTGTGGGCCT
  GAGGCAGGCA GTGGTGGGGA GAAGCGTAGC CACACAGCCC GGCCCACTTC GGAACTCACT
  GCAGAGGGAG CAACAGGTGG GAGGGGCCCT GTCTGCAGGT AAAGGGCCTC CCAGCGCCCC
  ACCTGCCCCA CTACTCACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397885802	MGP_WTSI_17_25971883	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222702361					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397885802	MGP_WTSI_17_25971883	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26053912 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8785	CpG island 8785	1112 bp distal
Cpgi8786	CpG island 8786	1597 bp proximal
Gm20683	predicted gene 20683	within coordinates
Gm56915	predicted gene, 56915	441 bp downstream
Rhbdl1	rhomboid like 1	within coordinates
Rr405106	regulatory region 405106	1819 bp downstream
Rr523679	regulatory region 523679	1960 bp distal
Rr523680	regulatory region 523680	1044 bp distal
Tssr143193	transcription start site region 143193	1784 bp downstream
Tssr146864	transcription start site region 146864	1972 bp upstream
Tssr146865	transcription start site region 146865	1536 bp upstream