rs222702393 SNP Detail

Summary

• ID
  rs222702393
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:26087705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACCCTAC CTTCCCAATT
  CCTCCCCGCC CCCACGCTAA AGGGGCCGGA AGCCCAGTCT CCATGGTTCC ACCTCCTGCG
  CCTCGCCCTG TGACGTCACT CCGAGTGACG CCACTACCAT CCAATGAGCT CTCAAATCCT
  GGGACTGGCT CGCGTCCTTC ACGGCAGCCG CGCGGAAGGC AACAAGGTCC CCCGCACGAG
  Y
  CCGCGAAGTC ACTTCTGGGT CGGAGTTAGT TGAGGCAGCG TCTGTACTAC AGGACCAAAG
  CTGCGTCCCC CCCCCCCCCC TGCCTGCCCA CATTCTGTAG TCTAGCCAAC TCCTCGAGAA
  CTCCTTGAAT GGAGGCCCTA CCAGAGTAAG GTCTGATAGT AGCCTTTGTA ACCCAAATTG
  GAGTCACTGA TGACATCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374007162	MGP_WTSI_8_26708161	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222702393					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374007162	MGP_WTSI_8_26708161	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:26087705 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20188	CpG island 20188	within coordinates
D830025C05Rik	RIKEN cDNA D830025C05 gene	within coordinates
Letm2	leucine zipper-EF-hand containing transmembrane protein 2	107 bp upstream
Rr368506	regulatory region 368506	within coordinates
Rr400804	regulatory region 400804	440 bp downstream
Tssr76686	transcription start site region 76686	562 bp downstream
Tssr76687	transcription start site region 76687	5 bp upstream
Tssr80717	transcription start site region 80717	651 bp upstream
Tssr80718	transcription start site region 80718	172 bp upstream
Tssr80719	transcription start site region 80719	91 bp upstream
Tssr80720	transcription start site region 80720	75 bp upstream