rs222708927 SNP Detail

Summary

• ID
  rs222708927
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79992300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCC CCCACGATCC CACGGCCACC
  Y
  GTGCCTTCCA GCTCTGTACC CAGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322281158	CHEV_7_87487438	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222708927					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79992300 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19332	CpG island 19332	331 bp proximal
Hddc3	HD domain containing 3	552 bp upstream
Rr400404	regulatory region 400404	391 bp upstream
Rr649870	regulatory region 649870	1843 bp distal
Rr649872	regulatory region 649872	1515 bp distal
Rr649873	regulatory region 649873	71 bp proximal
Rr649874	regulatory region 649874	515 bp proximal
Tssr67435	transcription start site region 67435	539 bp upstream
Tssr67436	transcription start site region 67436	613 bp upstream
Unc45a	unc-45 myosin chaperone A	1552 bp upstream