rs222714189 SNP Detail

Summary

• ID
  rs222714189
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110245142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCGGTGTG CGTGGCGGGG
  CGGTGCGGGG GGCGGCCGTG TGCGAGGCGC GAGTGTGAGC GCGCGCGGGA GGCGGGCGGA
  CGGGCTGCGG CAGTCGAGCG GCGCCCGCGG GCGAGCGGGG AAGGCGGCGG GAACCCAAAG
  TTGCCTCCTC GCGGGCCCGC GTCCCCGGCG GGGCTGCAGC CGGGGGCCGG CCGAGCGGCG
  R
  CCGCAGACCT GGACTCCCGC GGTACCTGGG CAGCGACCCC GCACGAGCAG CAGCAGCGTG
  GGCGGCGTTG GCGGCGGCGC GCGGGAAGCG AACCGGAGCT CCGGCGCGGC GCTGCGGCCG
  CCGGGGAACT CAGCTCAGGT GCGCGGCGAA GAGGGCGCGG GCTGGGACCC GCCCGCTGGG
  ACCTAGGAGG TGCGAGGCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387330515	MGP_WTSI_12_111516918	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222714189					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387330515	MGP_WTSI_12_111516918	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110245142 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5110	CpG island 5110	within coordinates
Dio3	deiodinase, iodothyronine type III	522 bp upstream
Dio3os	deiodinase, iodothyronine type III, opposite strand	640 bp upstream
Mir1247	microRNA 1247	579 bp upstream
Rr472866	regulatory region 472866	630 bp distal
Rr472867	regulatory region 472867	within coordinates
Rr472868	regulatory region 472868	503 bp distal
Tssr115195	transcription start site region 115195	520 bp upstream
Tssr117772	transcription start site region 117772	224 bp downstream
Tssr117773	transcription start site region 117773	250 bp downstream