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rs222720629 SNP Detail
Summary
  • ID
    rs222720629
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr11:69300729 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTTTACTCCT TTCCCGTCGA
AGCTGAACCC ACAACAGGCA CAGTACTCCC CTTTCCTAGT CACGTTCCCT TTAATCCTAG
CTTTGCCTTC TCAAATCTTA GAGCCCAGAA GCTGCTTCCC TGCGCATACC CCAGGTCCCG
GCAGGTAGGG AGCCTACTCT GCTCCCGGGA TCGGTCCATT GAGAGTCTAG AGTACAAAGA
S
CGGCGAGAGG CTAGTGTCGA GTACAAAGCC GCGGGGGCGG GGCTAGCGCT CCAGCTGGAG
AAAGCGCCGG GCAGGAAGCC GGGGGAGAGC GAGCGCGCGG CGAGGGGTTG GGGGCGGCTG
GAAAGTTCGC CTTGGCCGAG AAGTCTGCAC CGGGAGGAAA TTTCCAGCCA GCCCACAAAG
GCAGAAGGGT TTCTGGCGAA                                            

S = C/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss383783473 MGP_WTSI_11_69223405 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222720629 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss383783473 MGP_WTSI_11_69223405 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:69300729 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi3128 CpG island 3128 within coordinates
Gm72923 predicted gene, 72923 1415 bp upstream
Gm72933 predicted gene, 72933 6 bp upstream
Kdm6b KDM1 lysine (K)-specific demethylase 6B within coordinates
Rr247028 regulatory region 247028 within coordinates
Rr369256 regulatory region 369256 within coordinates
Rr402670 regulatory region 402670 1007 bp downstream
Rr402671 regulatory region 402671 243 bp downstream
Tssr3543 transcription start site region 3543 1179 bp upstream
Tssr102456 transcription start site region 102456 959 bp downstream
Tssr102457 transcription start site region 102457 599 bp downstream
Tssr102458 transcription start site region 102458 214 bp downstream
Tssr102459 transcription start site region 102459 183 bp downstream
Tssr102460 transcription start site region 102460 158 bp downstream
Tssr102461 transcription start site region 102461 124 bp downstream
Tssr102462 transcription start site region 102462 91 bp downstream
Tssr102463 transcription start site region 102463 648 bp upstream
Tssr102464 transcription start site region 102464 922 bp upstream
Tssr102465 transcription start site region 102465 1041 bp upstream
Tssr102466 transcription start site region 102466 1198 bp upstream
Tssr102467 transcription start site region 102467 1416 bp upstream
Tssr102468 transcription start site region 102468 1452 bp upstream
Tssr102469 transcription start site region 102469 1494 bp upstream
Tssr108665 transcription start site region 108665 1341 bp upstream
Tssr108666 transcription start site region 108666 743 bp upstream
Tssr108667 transcription start site region 108667 492 bp upstream
Tssr108668 transcription start site region 108668 481 bp upstream
Tssr108669 transcription start site region 108669 458 bp upstream
Tssr108670 transcription start site region 108670 334 bp upstream
Tssr108671 transcription start site region 108671 within coordinates
Tssr108672 transcription start site region 108672 465 bp downstream
Tssr108673 transcription start site region 108673 493 bp downstream
Tssr108674 transcription start site region 108674 537 bp downstream
Tssr108675 transcription start site region 108675 704 bp downstream
Tssr108676 transcription start site region 108676 749 bp downstream
Tssr108677 transcription start site region 108677 793 bp downstream
Tssr108678 transcription start site region 108678 809 bp downstream
Tssr108679 transcription start site region 108679 1108 bp downstream
Tssr108680 transcription start site region 108680 1762 bp downstream
Tssr108681 transcription start site region 108681 1793 bp downstream
Tssr108682 transcription start site region 108682 1836 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory