rs222721459 SNP Detail

Summary

• ID
  rs222721459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:104081057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCCAGCA GCAGCGCCAC
  CAAGGCGCGT CCGCACCGGC TTGCGGGCGA TTGCATGTTA CAGCTTGCTC CTGTGAGAGT
  CTGGTAGCCG CTCTGCTGTT TTCAGTCTGG AGACCAACTG GGGAGTGAAG ACAGGACACT
  TAAGTCAGCT ACCCCAGCCA AGCCTCTGAA AACACACTAG CCCGGTTGCC TCTACCCGCG
  Y
  CTTAACAGTA AGTTAAGTTT GCGCGCCAGT GGGGAACTTG GGCGCACGCC ACCCGCTGGT
  CTGCATTCAG TCTCCTCCCG GACCCTGCTC GCAGAGTTTT AATCCCCAGC CCTGCCGTAG
  ACCAGTCGGT GGGGAGGAGC ATTCGGGCAG GGGGTGTTCC AGACTGGGGA GGGTGCGTGT
  CCCAATGAAA GAACACTCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392314133	MGP_WTSI_14_104242838	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222721459					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392314133	MGP_WTSI_14_104242838	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:104081057 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6819	CpG island 6819	within coordinates
Ednrb	endothelin receptor type B	within coordinates
Gm35197	predicted gene, 35197	within coordinates
Rr407	regulatory region 407	472 bp proximal
Rr390089	regulatory region 390089	390 bp upstream
Rr497067	regulatory region 497067	43 bp proximal
Rr497068	regulatory region 497068	64 bp proximal
Rr497069	regulatory region 497069	771 bp proximal
Tssr130119	transcription start site region 130119	549 bp upstream
Tssr130120	transcription start site region 130120	466 bp upstream
Tssr130121	transcription start site region 130121	137 bp upstream
Tssr130122	transcription start site region 130122	70 bp upstream
Tssr130123	transcription start site region 130123	20 bp upstream
Tssr130124	transcription start site region 130124	5 bp downstream
Tssr130125	transcription start site region 130125	64 bp downstream
Tssr130126	transcription start site region 130126	89 bp downstream
Tssr130127	transcription start site region 130127	200 bp downstream
Tssr130128	transcription start site region 130128	545 bp downstream
Tssr130129	transcription start site region 130129	566 bp downstream
Tssr130130	transcription start site region 130130	587 bp downstream
Tssr130131	transcription start site region 130131	614 bp downstream
Tssr130132	transcription start site region 130132	625 bp downstream
Tssr130133	transcription start site region 130133	647 bp downstream
Tssr130134	transcription start site region 130134	679 bp downstream
Tssr130135	transcription start site region 130135	693 bp downstream
Tssr130136	transcription start site region 130136	723 bp downstream
Tssr130137	transcription start site region 130137	770 bp downstream
Tssr130138	transcription start site region 130138	799 bp downstream
Tssr130139	transcription start site region 130139	827 bp downstream