rs222722106 SNP Detail

Summary

• ID
  rs222722106
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76392805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGGACAG CCAGAGCTAC
  AGAGAAACCC TGTCTCAAAA AACAAAAACA CACAAAAAAA AGAACTAAGC TTGTTTCGCA
  AGGCCTCCAA ATGTTACCCG GCAGGCTGCT CACTTCAACA CAAGAGGGCA ACATCTGGCA
  ACAAAGTACA TATGGTGACT CCAGGCTCAA CTAGGCAACC ATTACACAAA CCACACTGCT
  K
  GGGGGGTGGG GTGGGGGAGG ACGGGGAGGG GAGGGGAGGG GAGGGGAGGA GAGGGGAGGG
  CAAGGGAGCT CCATATTGCA GATGTGACAA AAACTAAAGG TTGTTCCTGG AAAATCTTTT
  AAAATATGAA TACTTTTTCC CCCAAATGAA GACTTATGTC TTAAAAACCA AAACCAAAAC
  TCCCCAGGCT GTAGGCGTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss386548493	MGP_WTSI_12_77447018	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs222722106					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386548493	MGP_WTSI_12_77447018	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76392805 () rs orientation: forward

Symbol	Name	Function Class
A430103D13Rik	RIKEN cDNA A430103D13 gene	650 bp upstream
Rr257470	regulatory region 257470	805 bp distal
Rr257471	regulatory region 257471	within coordinates
Rr264230	regulatory region 264230	within coordinates
Zbtb25	zinc finger and BTB domain containing 25	1751 bp downstream