rs222723500 SNP Detail

Summary

• ID
  rs222723500
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115149962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAATCTAG CCAGGCCTGA
  GCAAGCGCGG GCTCCGCCAT ACTGTTTATG TGGGCATTAT CACCTGACAT TTCTTTCGGT
  GTTAGGCTTT ATAAGGGATT GAAAACAGGT GTAAAAATAG GGACGGGATC AGAACTGGAG
  CATCCTTGCA CACTCTACAC TCAGTTGTTA AATAATTGCA CCCGACATCA AATGTCACAC
  Y
  CATTAGCTTA TGCATTCCAG TAGCATCTGT GTTAATTAAG ATCTATTGTC AAGTCTGAGG
  GGTAATAAGT GTTTATCCCC CACTTCAGGT GCTAAGTGCG TTTCCTTATT TACCTTGACA
  ACTCTGTGCA CTAGATATAA TCATTATGAG TACAGTAGCA GTAGAAACCC AGGGATGCAC
  GGTTAAGCAA TTTACCTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484098	CHEV_10_114751113	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222723500					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115149962 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2204	CpG island 2204	757 bp proximal
Gm10752	predicted gene 10752	1589 bp upstream
Gm67120	predicted gene, 67120	1572 bp upstream
Rab21	RAB21, member RAS oncogene family	within coordinates
Rr402237	regulatory region 402237	1407 bp upstream
Rr439191	regulatory region 439191	1965 bp distal
Rr439192	regulatory region 439192	783 bp distal
Rr439193	regulatory region 439193	1511 bp proximal
Rr439194	regulatory region 439194	1524 bp proximal
Rr439195	regulatory region 439195	1583 bp proximal
Rr439196	regulatory region 439196	1749 bp proximal
Tssr95806	transcription start site region 95806	974 bp upstream
Tssr95807	transcription start site region 95807	1026 bp upstream
Tssr95808	transcription start site region 95808	1583 bp upstream
Tssr95809	transcription start site region 95809	1615 bp upstream
Tssr99318	transcription start site region 99318	818 bp downstream
Tssr99319	transcription start site region 99319	852 bp downstream
Tssr99320	transcription start site region 99320	1450 bp downstream
Tssr99321	transcription start site region 99321	1489 bp downstream
Tssr99322	transcription start site region 99322	1560 bp downstream