rs222726135 SNP Detail

Summary

• ID
  rs222726135
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60235266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGAGGGTTG TGGGTGAGGG TTGGAGTGAA
  CCTGGTACCC CACTCACACT GTGAATGCCC TGTCTCTCAG TCTGAGACAT GTTGAAATTT
  GAGAAATGGC ACACACTTCT GCAGCCAGAT AAGGGACATT TTCCGAGAAT CCAGGAAAAA
  S
  AGGGCCTAGG GACCCTGCAG AGGAGGTCTT GCGGGTTTCA GGGCCCACCA CCCCGTGTCT
  CTCTGCTTAC AGACCCTCTC CCTGGTAACC TGATGGCTGG CAGGCACTGA ATAGTCGACC
  ATACCATTCA AATTCCCAAG GGGGGTGGTG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323325372	CHEV_10_59862235	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222726135					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60235266 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Gm17455	predicted gene, 17455	377 bp upstream
Rr215449	regulatory region 215449	1066 bp distal
Rr223077	regulatory region 223077	636 bp distal
Rr228097	regulatory region 228097	within coordinates
Tssr93633	transcription start site region 93633	262 bp upstream
Tssr93634	transcription start site region 93634	315 bp upstream
Tssr93635	transcription start site region 93635	362 bp upstream
Tssr93636	transcription start site region 93636	1266 bp upstream