rs222729355 SNP Detail

Summary

• ID
  rs222729355
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91736686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTTGGTG CTTGTAAGCC
  AAGCATATCA CCTGGACTCA GCCACCGCCA CCCACAGCCT GGTGCTGTGA AACAAAGCAG
  GAGCCACATT GTTGTCCGGG AGCTACACTG TTATACATTC TTACTAAGTC TTCACATCTC
  ACATGGTTAA GTTTCTGTTT CCTAAGCCTA ATGTATCCTG AAGACCATGT TTTTCAACCT
  R
  TGTGGAACTA GTGACCCCAT GATATATACC CACTCCTTTG CCTTGCTAAA CTGAACCTGT
  GACATAGGAT TGCCCCATGA AAATGTGTCT TCCCAGATAC AATGATGCCT CCCCTTGCAC
  ATGATGCATG CTTGCACTTC TCACGGGCAG CCTTGAGCCC TTCTGTCCAG GTGCTAGCAA
  GAAATTATCT TGGCAGCCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369190339	MGP_WTSI_6_91709699	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222729355					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369190339	MGP_WTSI_6_91709699	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91736686 () rs orientation: forward

Symbol	Name	Function Class
Grip2	glutamate receptor interacting protein 2	1804 bp downstream
Rr141761	regulatory region 141761	1286 bp distal
Rr379752	regulatory region 379752	520 bp downstream
Slc6a6	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	642 bp downstream
Tssr57753	transcription start site region 57753	1876 bp downstream
Tssr57754	transcription start site region 57754	1780 bp downstream
Tssr57755	transcription start site region 57755	1684 bp downstream
Tssr57756	transcription start site region 57756	1644 bp downstream
Tssr57757	transcription start site region 57757	1619 bp downstream
Tssr57758	transcription start site region 57758	1583 bp downstream
Tssr57759	transcription start site region 57759	1359 bp downstream
Tssr57760	transcription start site region 57760	1303 bp downstream
Tssr57761	transcription start site region 57761	1286 bp downstream
Tssr57762	transcription start site region 57762	1245 bp downstream
Tssr57763	transcription start site region 57763	1221 bp downstream
Tssr57764	transcription start site region 57764	1197 bp downstream
Tssr57765	transcription start site region 57765	1164 bp downstream
Tssr57766	transcription start site region 57766	1138 bp downstream
Tssr57767	transcription start site region 57767	1067 bp downstream
Tssr57768	transcription start site region 57768	1057 bp downstream
Tssr57769	transcription start site region 57769	857 bp downstream
Tssr57770	transcription start site region 57770	746 bp downstream
Tssr62095	transcription start site region 62095	1353 bp upstream
Tssr62096	transcription start site region 62096	1071 bp upstream
Tssr62097	transcription start site region 62097	864 bp upstream