rs222734429 SNP Detail

Summary

• ID
  rs222734429
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:136375891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAAGGCGGA CCCCGAGGAG GAGGTGGCCA GGGCGCTGGA
  GGCGGGGGCG GTGAGGAGGA AGGGGAGGAG GCGGAGGCGG GCGCGGTGGT GGCGGCGGCC
  R
  GCGCGGCGGC GGAGGCGAGG TTGTGCCCCG GACTGTGTCC ACCGAGCTCA GCGGCTGTTG
  CCTGTGCGTG GAGAAGCAGC GGCGCCGCGA GGCAGAGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320974483	CHEV_3_136333094	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222734429					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136375891 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13862	CpG island 13862	within coordinates
Gm56786	predicted gene, 56786	186 bp upstream
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform	within coordinates
Rr398056	regulatory region 398056	within coordinates
Rr398057	regulatory region 398057	672 bp upstream
Rr585833	regulatory region 585833	1602 bp distal
Rr585834	regulatory region 585834	218 bp distal
Rr585835	regulatory region 585835	816 bp distal
Rr585836	regulatory region 585836	within coordinates
Rr585837	regulatory region 585837	150 bp proximal
Rr585838	regulatory region 585838	651 bp proximal
Tssr31863	transcription start site region 31863	within coordinates
Tssr31864	transcription start site region 31864	58 bp upstream
Tssr31865	transcription start site region 31865	88 bp upstream
Tssr31866	transcription start site region 31866	126 bp upstream
Tssr31867	transcription start site region 31867	150 bp upstream
Tssr31868	transcription start site region 31868	290 bp upstream
Tssr31869	transcription start site region 31869	300 bp upstream
Tssr31870	transcription start site region 31870	326 bp upstream
Tssr31871	transcription start site region 31871	390 bp upstream
Tssr31872	transcription start site region 31872	439 bp upstream
Tssr31873	transcription start site region 31873	456 bp upstream
Tssr31874	transcription start site region 31874	549 bp upstream
Tssr31875	transcription start site region 31875	685 bp upstream
Tssr31876	transcription start site region 31876	737 bp upstream
Tssr35849	transcription start site region 35849	193 bp upstream