rs222738582 SNP Detail

Summary

• ID
  rs222738582
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:15218386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCCTAAT ATTTCTACAC
  CACGTGCACG CAGTGCTCAC AGAGCCCAGA AGAGGACATC GAATCTCTTA GGACTGCTTA
  CAGCTATTTT TAGGCTGGCA TGTGAGTTCT GGGAGTCTCA TCTTAGTCCA TTGACAGTAT
  TCTATTCATT TCTTTTTTGG GGGGGGAGGT TTCGAGACAG GGTTTCTCTT TATAGCCCTG
  R
  CTGTCCAGGA ACTCACTTTT TAGACCAGGC TGGCCTCGAA CTCAGAAATC CTGCCTCTGC
  CTCCCGAGTG CTGGGATTAA AGGCGTGCGC CACCACGCCC GGCCATTGAC AGTATACTTA
  ACTGCTAGGC TATCGTCTCA GCCATAATCT AAAGGTTCTT TTACACGTTG TTAGGATTAC
  AGGCCTGTGA CCATTTGATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss376729861	MGP_WTSI_9_15111534	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs222738582					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376729861	MGP_WTSI_9_15111534	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:15218386 () rs orientation: forward

Symbol	Name	Function Class
4931406C07Rik	RIKEN cDNA 4931406C07 gene	642 bp upstream
Cpgi21368	CpG island 21368	309 bp distal
Rr205988	regulatory region 205988	within coordinates
Rr401250	regulatory region 401250	809 bp downstream
Taf1d	TATA-box binding protein associated factor, RNA polymerase I, D	within coordinates
Tssr83860	transcription start site region 83860	871 bp downstream
Tssr83861	transcription start site region 83861	850 bp downstream
Tssr83862	transcription start site region 83862	822 bp downstream
Tssr88240	transcription start site region 88240	976 bp upstream
Tssr88241	transcription start site region 88241	931 bp upstream