rs222740106 SNP Detail

Summary

• ID
  rs222740106
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102283652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTAACCTT CCAAAACATG GCTGACCCAA
  GGCATACACC TTCCTGGGTT TCTTTCCCAC TGGTACCTTG TGTGCCACCT GAAAGTGTGG
  GGTCTTTCTT AAATGTGTTC CCAACCACGG GGCTTCTTGT AGTGCTTATC TGATAAAAGG
  R
  TTACAGTGCC TTCCATATGG ATCCAGTACA ATATATTAAT TCATTAAAAA GTTTTTTTTT
  CTTGCCTCAT GCAAGCTTCC CCCTGTCTTT CCCTAGAGAG CAGGGACTGT CTCTTATCAA
  ATTTTTATTT CATATACCAG CTAATATAGT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320437756	CHEV_2_102293464	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222740106					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102283652 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11976	CpG island 11976	1027 bp distal
Fjx1	four jointed box 1	1515 bp upstream
Rr561695	regulatory region 561695	1963 bp distal
Rr561696	regulatory region 561696	718 bp distal
Rr561697	regulatory region 561697	136 bp proximal
Rr561698	regulatory region 561698	263 bp proximal
Tssr25397	transcription start site region 25397	1533 bp upstream
Tssr25398	transcription start site region 25398	1492 bp upstream
Tssr25399	transcription start site region 25399	1464 bp upstream